Resumo Um dos textos da série “Biodiversidade do Estado de São Paulo”, dentro do Programa FAPESP-Biota, foi dedicado à Infraestrutura para Conservação da Biodiversidade, com foco nas coleções biológicas e nas unidades de conservação. Do início dos anos 60, quando a FAPESP foi criada, até os dias atuais muito foi investido em pesquisa nas mais diversas áreas, incluindo a preservação da biodiversidade do patrimônio genético nacional. Uma história de longos anos de avanços no conhecimento científico foi construída, a qual pode ser retratada através dos projetos que resultaram em dados de alta qualidade com impacto nacional e internacional. As coleções microbiológicas são centros geradores de tecnologia e recursos humanos especializados, que atuam (dentre outros) como repositórios vivos, preservando material de referência, e como testemunho da história da biodiversidade microbiana, preservando o que pode não mais existir. Possuem enorme potencial para alavancar a bioeconomia global e tratar de problemas que resultaram do mau uso dos recursos naturais. Essa leitura traz a todos o histórico, os avanços e as perspectivas futuras das coleções de microrganismos, dentro dos esforços de 60 anos de atividades científicas no Brasil.

Abstract One of the texts in the “Biodiversity in the State of São Paulo” series, within the FAPESP-Biota Program, was dedicated to the Infrastructure for Biodiversity Conservation, with a focus on Biological Collections and Conservation Units. From the early 1960s, when FAPESP was established, to the present day, financial resources have been invested in the preservation of the biodiversity of the national genetic heritage, besides other fields. History of years of advances in scientific knowledge was built, which can be portrayed through the projects that resulted in high-quality data of national and international impact. Microbiological collections are centers that generate technology and specialized human resources, and act (among other things) as living repositories preserving reference material and as witnesses to the history of microbial biodiversity because they preserve what may no longer exist. They have enormous potential to promote the global bioeconomy and address problems that have resulted from the misuse of natural resources. This reading brings everyone the history, advances, and future perspectives of culture collections, within the efforts of 60-year scientific activities in Brazil.

Resumen La antracnosis de la planta de guaraná (Paullinia cupana) es una enfermedad causada por Colletotrichum guaranicola Albuq. Pocos estudios han analizado el origen, la forma de penetración y la colonización de hongos endofíticos en la planta de guaraná. El presente estudio tuvo como objetivo determinar las diferencias en las actividades enzimáticas de cepas endofíticas y patogénicas de C. guaranicola durante el proceso de infección inicial en hojas de clones sensibles a la antracnosis de guaraná. Se aislaron 14 cepas patogénicas y nueve endofíticas de C. guaranicola desde hojas de guaraná con y sin síntomas de antracnosis, respectivamente. Se evaluaron la actividad enzimática de proteasa, amilasa, polifenol oxidasa, lipasa, pectinasa y la actividad celulolítica para cada cepa del hongo. El diseño experimental para cada ensayo enzimático fue completamente al azar con cinco repeticiones. La evaluación enzimática se basó en la medición del halo de reacción enzimática formada en cada ensayo. Se evaluaron las conidias durante su germinación y formación de apresorios. Los resultados no detectaron diferencia enzimática entre las cepas potogénicas y endofíticas. Los datos previos a la germinación mostraron diferencias entre las cepas endofíticas y potogénicas. La colonización de los tejidos de la planta por cepas patogénicas se evidenció tras la aparición de síntomas de la enfermedad después de 48 horas de la inoculación (hdi), mientras que para las endofíticas se observó la presencia de apresorios en la superficie de la epidermis 48 hdi y no se observó la colonización de las células.

Summary Anthracnose of the guarana plant (Paullinia cupana) is a disease caused by Colletotrichum guaranicola Albuq. Few studies have analyzed the origin, the form of penetration and the colonization of endophytic fungi in the guarana plant. This study aimed to determine differences in the enzymatic activities of endophytic and pathogenic strains of C. guaranicola during the initial infection process in leaves of clones sensitive to guarana anthracnose. Fourteen pathogenic and nine endophytic strains of C. guaranicola were isolated from guarana leaves with and without anthracnose symptoms, respectively. The enzymatic activities of protease, amylase, polyphenol oxidase, lipase, pectinase, and cellulolytic activities were evaluated for each fungal strain. The experimental design for each enzymatic assay was completely randomized with five replicates. The enzymatic evaluation was based on the measurement of halo produced by the enzyme reaction in each assay. Conidia were evaluated during germination and appressoria formation. Results did not detect enzymatic difference between pathogenic and endophytic strains. Data prior to germination showed differences between endophytic and pathogenic strains. Colonization of plant tissues by pathogenic strain was evidenced after the appearance of disease symptoms 48 hours after inoculation (hai), while for endophytic strains the presence of appressoria was observed on the surface of the epidermis 48 hai, and colonization of cells was not observed.

Abstract Pseudoboehmite (AlOOH.xH2O) is one of the precursors of alumina. Its calcination produces different phases of alumina and at 1200º C the most stable phase, α-alumina, is formed. The synthesis of pseudoboehmite by the sol-gel process results in a product with high purity, high specific surface area, and high reproducibility. The aging of the pseudoboehmite at temperatures above room temperature results in pseudoboehmites with distinct properties. In this work we report the synthesis of pseudoboehmite by the sol-gel process, using aluminum nitrate and aluminum chloride as precursors, and investigate the effect of acetate ion on crystallinity, adsorption capacity, particle morphology, thermal properties and specific surface area. The X-ray diffraction data of the synthesized pseudoboehmites in the presence of the acetate ion revealed high quality nanoparticles.

Aluminum beverage cans should have very specific crystallographic textures to increase productivity, reduce losses and reduce the amount of material. The present work seeks to add information on the crystallographic texture of aluminum alloy 3104 H-19 during the different manufacturing steps, which undergoes a flat sheet of metal for a cylindrical body. The work scope encompasses from the cup drawing to the final ironing operation and its objective is to add information on the texture evolution of the aluminum alloy undergoes in the intermediary steps. Crystallographic texture continues to change from the drawn cup through the ironing stages. This rotation is assumed to be a grain alignment with the plastic flow of the material.

ABSTRACT Purpose: This study aims to evaluate the link between preoperative parameters and oxidative stress (OS) markers in the bladder wall of men undergoing open prostatectomy. Materials and Methods: From July 2014 to August 2016, men aged ≥ 50 years and presenting with LUTS were prospectively enrolled. Preoperative assessment included validated questionnaires (IPSS and OAB - V8), lower urinary tract ultrasound and urodynamics. Bladder biopsies were taken during open prostatectomy for determination of OS markers. Increased OS was defined by increased concentration of malondialdehyde (MDA) and / or decreased concentration of antioxidant enzymes (superoxide dismutase and / or catalase). P<0.05 was regarded as statistically significant. Results: Thirty - eight consecutive patients were included. Mean age was 66.36 ± 6.44 years, mean prostate volume was 77.7 ± 20.63 cm3, and mean IPSS was 11.05 ± 8.72 points. MDA concentration was increased in men with severe bladder outlet obstruction (BOO grade V - VI according to the Schaefer's nomogram) in comparison with BOO grade III - IV (p = 0.022). Patients with severe LUTS also had higher MDA concentration when compared to those with mild LUTS (p = 0.031). There was a statistically significant association between increased post - void residual urine (cut off ≥ 50 mL) and not only higher levels of MDA, but also reduced activity of SOD and catalase (p < 0.05). Conclusions: This pilot study showed that severity of LUTS and BOO were associated with increased MDA concentration in the bladder wall of men undergoing open prostatectomy. Further studies are still needed to assess the role of non - invasive biomarkers of OS in predicting bladder dysfunction in men with LUTS.

Resumen En este trabajo se presenta la caracterización de una escoria de aluminio proveniente de la industria primaria, con tamaño de partícula inferior a 3.35 mm. Inicialmente el material fue separado en cuatro fracciones granulométricas las cuales fueron analizadas mediante difracción de rayos X con el fin de analizar la cantidad de cada una de las fases cristalinas presentes en la escoria. Se encontraron las siguientes fases: aluminio metálico, óxido de aluminio, espinelio, espinelio con defecto, diaoyudaoite y nitruro de aluminio. La dependencia del tamaño de partícula con la cantidad de cada una de las fases cristalinas fue analizada mediante un análisis de varianza (ANOVA) con un nivel de confianza del 99%. Del análisis estadístico se pudo concluir que la variación en el contenido encontrado de cada fase cristalina es explicada en un alto porcentaje por el tamaño de partícula.

Abstract The Rietveld method was used in order to determine the amount of crystalline phases present in aluminum dross with particle size less than 3.35 mm. Initially, the dross was separated in four granulometric fractions by screening. Two samples of each granulometric size were obtained by means of quartering and homogenization. Each sample was grounded and subsequently analyzed by X-ray diffraction in order to identify and quantify the crystalline phases present in the dross. Metallic aluminum, aluminum oxide, spinel, defect spinel, diaoyudaoite and aluminum nitride were identified and then quantified by the Rietveld method. In order to observe the dependence of the particle size with the amount of each phase, statistical analyses was done by means of analyses of variance (ANOVA). The coefficient of determination R2 was greater than 94% for all phases except for the NaAl11O17 phase. Thus, the amount of each crystalline phase is satisfactory explained by particle size.

Ternary Ni-W-P films were produced by electroless deposition using baths with different tungsten concentrations. After deposition, the coated surfaces were annealed at 400°C for 1h. Surface morphology and film composition in the as-plated condition were assessed by SEM and EDS analyses, respectively. The crystalline phases after annealing were investigated by X-ray diffraction (XRD). Nanoindentation tests were performed to assess the mechanical properties of the deposited films. Surface roughness was determined by confocal laser scanning microscopy (CLSM). Friction coefficient was evaluated by reciprocating were tests in a nanotribometer. The corrosion behavior was evaluated by potentiodynamic polarization curves. The results showed that the surface morphology, crystallization behavior and corrosion resistance were affected by the tungsten content in the film. The best corrosion performance was obtained for the ternary films after annealing. Hardness, surface roughness and friction coefficient were dependent of the tungsten concentration in the film.

In the current work, XRD, SEM, EBSD and TEM techniques were used to evaluate the microstructure of stainless Fe-Mn-Si-Cr-Ni-Co shape memory steel processed by ECAE and annealed for one hour at temperatures ranging from 650ºC to 950ºC. The results were then correlated with the mechanical and shape-memory properties of the steel. It was observed that the samples containing large grains and a microstructure free of defects or precipitates presented a high volume fraction of multi-variant thermal martensite and stress-induced martensite, resulting in good shape recovery, owing to the memory effect. The grain refinement and precipitation of second-phase particles decreased the volume fraction and number of martensite variants and considerably increased the mechanical resistance, enhancing the elastic shape recovery. It was shown that shape memory properties were essentially related to the mechanical resistance of the matrix, which in turn was related to the microstructure.

The production of tribological nanoscale multilayer CrN/NbN coatings up to 6 µm thick by Sputtering/HIPIMS has been reported in literature. However, high demanding applications, such as internal combustion engine parts, need thicker coatings (>30 µm). The production of such parts by sputtering would be economically restrictive due to low deposition rates. In this work, nanoscale multilayer CrN/NbN coatings were produced in a high-deposition rate, industrial-size, Cathodic Arc Physical Vapor Deposition (ARC-PVD) chamber, containing three cathodes in alternate positions (Cr/Nb/Cr). Four 30 µm thick NbN/CrN multilayer coatings with different periodicities (20, 10, 7.5 and 4 nm) were produced. The coatings were characterized by X-Ray Diffraction (XRD) and Transmission Electron Microscopy (TEM). The multilayer coating system was composed of alternate cubic rock-salt CrN and NbN layers, coherently strained due to lattice mismatch. The film grew with columnar morphology through the entire stratified structure. The periodicities adopted were maintained throughout the entire coating. The 20 nm periodicity coating showed separate NbN and CrN peaks in the XRD patterns, while for the lower periodicity (≤10nm) coatings, just one intermediate lattice (d-spacing) was detected. An almost linear increase of hardness with decreasing bilayer period indicates that interfacial effects can dominate the hardening mechanisms.

ABSTRACT Bacterial fruit blotch (BFB) of cucurbit plants is caused by Acidovorax citrulli and represents a serious concern to melon (Cucumis melo L.) growers worldwide, including those in Brazil. Thirty-four A. citrulli strains from different melon production areas of northeastern Brazil were characterized for their virulence on melon fruits and their substrate utilization and molecular profiles. Based on the analysis of BFB severity on melon fruits, the A. citrulli strains were divided into three groups, classified as mildly, moderately or highly virulent. Although host-related groups were not observed, the watermelon and ‘melão-pepino’ strains exhibited only low or moderate virulence on melon fruit. Substrate utilization profiles revealed that 94 % of the 95 tested compounds were used by A. citrulli strains as a carbon source. Overall, based on substrate utilization, low variability was observed with no relationship to host of origin. The formation of one group of A. citrulli strains based on Repetitive Sequence-based PCR (rep-PCR) analysis confirmed the low variability observed in the substrate utilization analyses. Bayesian inference based on the analysis of 23S rDNA partial sequence data resulted in one well-supported clade and clustered the strains with the A. citrulli-type species with high posterior probability support. Based on the markers used, the Brazilian A. citrulli strains belong to a single group, which corresponds to the previously described Group I for this bacterium in the United States.

Pitting corrosion of the aluminium cladding of spent nuclear fuels stored in light water pools has been observed. To prevent this, coating of the Al cladding with hydrotalcite (HTC) was proposed. This paper presents the effect of chemical bath and processing parameters on microstructure and corrosion behavior of HTC coatings on alloy AA 6061 specimens. The HTC coating from the high temperature nitrate bath was homogeneous, thicker and consisted of well-defined intersecting platelets than that formed from the room temperature carbonate bath. Electrochemical polarization tests carried out with HTC coated AA 6061 specimens in 0.01 M NaCl revealed that specimens coated with HTC from the nitrate bath and further treated in a cerium salt solution were the most resistant to corrosion. Field tests in which un-coated and coated AA 6061 alloy coupons as well as full-size plates were exposed to the IEA-R1 reactor's spent fuel basin for duration of up to 14 months further corroborated the high corrosion resistance imparted by the high temperature HTC + Ce coating. The mechanism by which the HTC coating and cerium protect the Al alloy is discussed.

Microbial culture collections underpin biotechnology applications and are important resources for clinical microbiology by supplying reference strains and/or performing microbial identifications as a service. Proteomic profiles by MALDI-TOF MS have been used for Candida spp. identification in clinical laboratories and demonstrated to be a fast and reliable technique for the routine identification of pathogenic yeasts. The main aim of this study was to apply MALDI-TOF MS combined with classical phenotypic and molecular approaches to identify Candida clinical isolates preserved from 1 up to 52 years in a Brazilian culture collection and assess its value for the identification of yeasts preserved in this type of collections. Forty Candida spp. clinical isolates were identified by morphological and biochemical analyses. Identifications were also performed by the new proteomic approach based on MALDI-TOF MS. Results demonstrated 15% discordance when compared with morphological and biochemical analyses. Discordant isolates were analysed by ITS sequencing, which confirmed the MALDI-TOF MS identifications and these strains were renamed in the culture collection catalogue. In conclusion, proteomic profiles by MALDI-TOF MS represents a rapid and reliable method for identifying clinical Candida species preserved in culture collections and may present clear benefits when compared with the performance of existing daily routine methods applied at health centres and hospitals.

OBJECTIVE: To evaluate the concordance between the Gleason scores of prostate biopsies and radical prostatectomy specimens, thereby highlighting the importance of the prostate-specific antigen (PSA) level as a predictive factor of concordance. METHODS: We retrospectively analyzed 253 radical prostatectomy cases performed between 2006 and 2011. The patients were divided into 4 groups for the data analysis and dichotomized according to the preoperative PSA, <10 ng/mL and ≥10 ng/mL. A p-score <0.05 was considered significant. RESULTS: The average patient age was 63.3±7.8 years. The median PSA level was 9.3±4.9 ng/mL. The overall concordance between the Gleason scores was 52%. Patients presented preoperative PSA levels <10 ng/mL in 153 of 235 cases (65%) and ≥10 ng/mL in 82 of 235 cases (35%). The Gleason scores were identical in 86 of 153 cases (56%) in the <10 ng/mL group and 36 of 82 (44%) cases in the ≥10 ng/mL group (p = 0.017). The biopsy underestimated the Gleason score in 45 (30%) patients in the <10 ng/mL group and 38 (46%) patients in the ≥10 ng/mL (p = 0.243). Specifically, the patients with Gleason 3 + 3 scores according to the biopsies demonstrated global concordance in 56 of 110 cases (51%). In this group, the patients with preoperative PSA levels <10 ng/dL had higher concordance than those with preoperative PSA levels ≥10 ng/dL (61% x 23%, p = 0.023), which resulted in 77% upgrading after surgery in those patients with PSA levels ≥10 ng/dl. CONCLUSION: The Gleason scores of needle prostate biopsies and those of the surgical specimens were concordant in approximately half of the global sample. The preoperative PSA level was a strong predictor of discrepancy and might improve the identification of those patients who tended to be upgraded after surgery, particularly in patients with Gleason scores of 3 + 3 in the prostate biopsy and preoperative PSA levels ≥10 ng/mL.

Six strains of white-rot fungi isolated from southern Chile were evaluated for their ergosterol/biomass correlation and ligninolytic potential in solid medium to formulate pellets for Reactive Orange 165 (RO165) decolourization. The fungus Anthracophyllum discolor was selected to formulate complex pellets (fungal mycelium, sawdust, and activated carbon), coated pellets (complex pellet + alginate) and simple pellets (fungal mycelium). The activity of ligninolytic enzymes (laccase, manganese peroxidase, manganese-independent peroxidase, and lignin peroxidase) was evaluated in both the complex and coated pellets in modified Kirk medium, and the morphology of the pellets was studied using scanning electron microscopy (SEM). Complex pellets of A. discolor showed a higher enzymatic production mainly MnP (38 U L-1 at day 15) compared to coated and simple pellets. Examinations using SEM showed that both pellets produced a black core that was entrapped by a layer of fungal mycelium. Decolourization of RO165 was demonstrated with all the pellets formulated. However, the highest and fastest decolourization was obtained with complex pellets (100% at day 8). Therefore, complex pellets of A. discolor can be used for the biological treatment of wastewater contaminated with RO165.

The antifungal activity of essential oils of fennel (Foeniculum vulgare Mill., Apiaceae), ginger (Zingiber officinale Roscoe, Zingiberaceae), mint (Mentha piperita L., Lamiaceae) and thyme (Thymus vulgaris L., Lamiaceae) was evaluated against mycotoxin producers Aspergillus flavus and A. parasiticus. High Resolution Gas Chromatography was applied to analyze chemical constituents of essential oils. The effect of different concentrations of essential oils was determined by solid medium diffusion assay. Mycelial growth and sporulation were determined for each essential oil at the concentrations established by solid medium diffusion assay. At the fifth, seventh and ninth days the mycelial diameter (Ø mm) and spore production were also determined. FUN-1 staining was performed to assess cell viability after broth macrodilution assay. Trans-anethole, zingiberene, menthol and thymol are the major component of essential oils of fennel, ginger, mint and thyme, respectively. The effective concentrations for fennel, ginger, mint and thyme were 50, 80, 50 and 50% (oil/DMSO; v/v), respectively. The four essential oils analysed in this study showed antifungal effect. Additionally, FUN-1 staining showed to be a suitable method to evaluate cell viability of potential mycotoxigenic fungi A. flavus and A. parasiticus after treatment with essential oils.